Brain Extraction Tool (BET)
Automatically extracts brain tissue from non-brain tissues in MRI images.
FEAT (FMRI Expert Analysis Tool)
Comprehensive tool for preprocessing and statistical analysis of fMRI data.
FLIRT (FMRIB's Linear Image Registration Tool)
Performs linear registration of brain images for alignment and normalization.
FAST (FMRIB's Automated Segmentation Tool)
Segments brain images into different tissue types such as gray matter, white matter, and CSF.
ProbtrackX
Performs probabilistic tractography for diffusion MRI data to map neural pathways.
MELODIC (Multivariate Exploratory Linear Optimized Decomposition into Independent Components)
Performs independent component analysis (ICA) for fMRI data to identify networks and artifacts.